View source: R/iprSelectedPositions.R
domainsForPos | R Documentation |
Looks up the conserved protein domains (InterPro) that have been annotated to gene and overlap with amino acid position 'aa.pos'.
domainsForPos(gene, aa.pos, iprscan.tbl, gene.col = "V1",
start.col = "V7", end.col = "V8", ipr.col = "V12")
gene |
The gene accession or ID as used in iprscan.tbl |
aa.pos |
The amino acid position (non aligned) to be overlapped by any InterPros |
gene.col |
The column index or name of iprscan.tbl in which to look up the gene accessions |
start.col |
The column index or name of iprscan.tbl in which to look up the domain start positions |
end.col |
The column index or name of iprscan.tbl in which to look up the domain end positions |
ipr.col |
The column index or name of iprscan.tbl in which to look up the InterPro identifier |
A character vector of matching InterPro domains.
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