addGeneIdsCols2OrthologsKaKsTable: Uses 'gene.1' as the first member of the orthologous gene...
In asishallab/GeneFamilies: Analyses different properties of gene families
View source: R/selection_funks.R
addGeneIdsCols2OrthologsKaKsTable R Documentation
Uses 'gene.1' as the first member of the orthologous gene pair and extracts
the gene identifier of the pairs second member from the 'Sequence' column of
'orth.kaks.tbl' and replaces this column with the result.
Description
Uses 'gene.1' as the first member of the orthologous gene pair and extracts
the gene identifier of the pairs second member from the 'Sequence' column of
'orth.kaks.tbl' and replaces this column with the result.
Usage
addGeneIdsCols2OrthologsKaKsTable(orth.kaks.tbl, gene.1)
Arguments
orth.kaks.tbl
the result of calling 'readKaKsCalculatorOutput(...)'
on the result file of KaKs_Calculator used on conserved orthologs.
gene.1
the identifier of the anchoring gene used within the currently
processed group of conserved orthologs.
Value
A modified version of 'orth.kaks.tbl' in which the column 'Sequence'
is replaced with two columns 'gene.1' and 'gene.2'.
asishallab/GeneFamilies documentation built on July 28, 2024, 11:44 a.m.
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View source: R/selection_funks.R
| addGeneIdsCols2OrthologsKaKsTable | R Documentation |
Uses 'gene.1' as the first member of the orthologous gene pair and extracts the gene identifier of the pairs second member from the 'Sequence' column of 'orth.kaks.tbl' and replaces this column with the result.
Description
Uses 'gene.1' as the first member of the orthologous gene pair and extracts the gene identifier of the pairs second member from the 'Sequence' column of 'orth.kaks.tbl' and replaces this column with the result.
Usage
addGeneIdsCols2OrthologsKaKsTable(orth.kaks.tbl, gene.1)
Arguments
orth.kaks.tbl |
the result of calling 'readKaKsCalculatorOutput(...)' on the result file of KaKs_Calculator used on conserved orthologs. |
gene.1 |
the identifier of the anchoring gene used within the currently processed group of conserved orthologs. |
Value
A modified version of 'orth.kaks.tbl' in which the column 'Sequence' is replaced with two columns 'gene.1' and 'gene.2'.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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