alignCDSWithAlignedAASeq: Uses an amino acid multiple sequence alignment to guide the...

In asishallab/GeneFamilies: Analyses different properties of gene families

Uses an amino acid multiple sequence alignment to guide the alignment of codon sequence 'cds'.

Description

Uses an amino acid multiple sequence alignment to guide the alignment of codon sequence 'cds'.

Usage

alignCDSWithAlignedAASeq(cds, aligned.aa.seq, aa.gap = "-",
  codon.gap = "---")

Arguments

'cds'	a String representing the codon sequence to align.
'aligned.aa.seq'	a String representing the aligned amino acid sequence.
'aa.gap'	the string used to represent a gap in the aligned AA sequence
'codon.gap'	the string used to represent a gap in the aligned codon sequence

Value

A String representing the aligned codon sequence

asishallab/GeneFamilies documentation built on July 28, 2024, 11:44 a.m.