axt: Extracts pairs of genes from a CDS multiple sequence...
In asishallab/GeneFamilies: Analyses different properties of gene families
View source: R/selection_funks.R
axt R Documentation
Extracts pairs of genes from a CDS multiple sequence alignment.
Description
Extracts pairs of genes from a CDS multiple sequence alignment.
Usage
axt(cds.msa, anchor.gene)
Arguments
cds.msa
an instance of Biostrings::DNAStringSet representing the
multiple alignment of coding sequences.
anchor.gene
the gene identifier for which to build pairs with the
other genes present in 'cds.msa'.
Value
A named list. Names are the non anchor gene identifier that are
paired with the anchor gene. Values are the gene pairs themselfes.
asishallab/GeneFamilies documentation built on May 22, 2023, 11:30 a.m.
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View source: R/selection_funks.R
| axt | R Documentation |
Extracts pairs of genes from a CDS multiple sequence alignment.
Description
Extracts pairs of genes from a CDS multiple sequence alignment.
Usage
axt(cds.msa, anchor.gene)
Arguments
cds.msa |
an instance of Biostrings::DNAStringSet representing the multiple alignment of coding sequences. |
anchor.gene |
the gene identifier for which to build pairs with the other genes present in 'cds.msa'. |
Value
A named list. Names are the non anchor gene identifier that are paired with the anchor gene. Values are the gene pairs themselfes.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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