cbindAnnotationDescription: Adds a column to 'enrichment.tbl' holding human readable...

In asishallab/GeneFamilies: Analyses different properties of gene families

Adds a column to 'enrichment.tbl' holding human readable descriptions for the annotations found o be enriched. This function has been written primarily for use with InterPro annotations.

Description

Adds a column to 'enrichment.tbl' holding human readable descriptions for the annotations found o be enriched. This function has been written primarily for use with InterPro annotations.

Usage

cbindAnnotationDescription(enrichment.tbl, annotation.db = ipr.db,
  ano.desc.field = "NAME")

Arguments

enrichment.tbl	a data.frame result of function 'enrichmentTests' or 'selectSignificantEnrichments'
annotation.db	a list in which the names are function annotation identifiers, e.g. IPR666666
ano.desc.field	the name of the list entry to select in order to obtain the description from members of 'annotation.db'

Value

A copy of 'enrichment.tbl' with an additional column holding the decriptions of the respective annotations.

asishallab/GeneFamilies documentation built on July 28, 2024, 11:44 a.m.