API for ataudt/aneufinder
Analysis of Copy Number Variation in Single-Cell-Sequencing Data
| Global functions | |
|---|---|
| .onAttach | Source code |
| AneuFinder | Man page |
| AneuFinder-package | Man page |
| Aneufinder | Man page Source code |
| DNAcopy.findCNVs | Man page Source code |
| HMM.findCNVs | Man page Source code |
| aneuBiHMM | Man page |
| aneuHMM | Man page |
| annotateBreakpoints | Man page Source code |
| bam2GRanges | Man page Source code |
| bed2GRanges | Man page Source code |
| bi.edivisive.findCNVs | Man page Source code |
| biDNAcopy.findCNVs | Man page Source code |
| biHMM.findCNVs | Man page Source code |
| binReads | Man page Source code |
| binned.data | Man page |
| binning | Man page |
| blacklist | Man page Source code |
| breakpointColors | Man page Source code |
| check.integer | Source code |
| check.logical | Source code |
| check.multivariate.model | Source code |
| check.nonnegative.integer.vector | Source code |
| check.nonnegative.vector | Source code |
| check.positive | Source code |
| check.positive.integer | Source code |
| check.positive.integer.vector | Source code |
| check.positive.vector | Source code |
| check.strand | Source code |
| check.univariate.model | Source code |
| check.univariate.modellist | Source code |
| clusterByQuality | Man page Source code |
| clusterHMMs | Man page Source code |
| collapseBins | Man page Source code |
| colors | Man page |
| compareMethods | Man page Source code |
| compareModels | Man page Source code |
| confidenceIntervals | Source code |
| consensusSegments | Man page Source code |
| correctGC | Man page Source code |
| dbinom.mean | Source code |
| dbinom.prob | Source code |
| dbinom.size | Source code |
| dbinom.variance | Source code |
| dgeom.mean | Source code |
| dgeom.prob | Source code |
| dgeom.variance | Source code |
| dnbinom.mean | Source code |
| dnbinom.prob | Source code |
| dnbinom.size | Source code |
| dnbinom.variance | Source code |
| dzinbinom | Man page Source code |
| edivisive.findCNVs | Man page Source code |
| estimateComplexity | Man page Source code |
| export | Man page |
| exportCNVs | Man page Source code |
| exportGRanges | Man page Source code |
| exportReadCounts | Man page Source code |
| filterSegments | Man page Source code |
| findCNVs | Man page Source code |
| findCNVs.strandseq | Man page Source code |
| findHotspots | Man page Source code |
| fixedWidthBins | Man page Source code |
| getBreakpoints | Man page Source code |
| getDistinctColors | Man page Source code |
| getQC | Man page Source code |
| getSCEcoordinates | Man page Source code |
| get_rightxlim | Source code |
| heatmapAneuploidies | Man page |
| heatmapGenomewide | Man page |
| heatmapGenomewideClusters | Man page |
| hotspotter | Man page Source code |
| hotspotter.variable | Man page Source code |
| importBed | Man page Source code |
| initializeStates | Man page Source code |
| insertchr | Source code |
| karyotypeMeasures | Man page Source code |
| loadFromFiles | Man page Source code |
| mergeStrandseqFiles | Man page Source code |
| messageU | Source code |
| plot.GRanges | Man page Source code |
| plot.GRangesList | Man page Source code |
| plot.aneuBiHMM | Man page Source code |
| plot.aneuHMM | Man page Source code |
| plot.character | Man page Source code |
| plotBivariateHistograms | Source code |
| plotHeterogeneity | Man page |
| plotHistogram | Man page Source code |
| plotKaryogram | Man page |
| plotProfile | Man page |
| plot_pca | Man page |
| print.aneuBiHMM | Man page Source code |
| print.aneuHMM | Man page Source code |
| pzinbinom | Man page Source code |
| qc.bhattacharyya | Man page Source code |
| qc.entropy | Man page Source code |
| qc.sos | Man page Source code |
| qc.spikiness | Man page Source code |
| qualityControl | Man page |
| qzinbinom | Man page Source code |
| readConfig | Man page Source code |
| refineBreakpoints | Man page Source code |
| rzinbinom | Man page Source code |
| simulateReads | Man page Source code |
| startTimedMessage | Source code |
| stateColors | Man page Man page Source code |
| stopTimedMessage | Source code |
| strandColors | Man page Man page Source code |
| stripchr | Source code |
| subsetByCNVprofile | Man page Source code |
| transCoord | Man page Source code |
| variableWidthBins | Man page Source code |
| writeConfig | Man page Source code |
| zinbinom | Man page |
