tabixToH5SingleThread: Read fragment information

In beyondpie/smmtools: Single-cell multi-omics sequenceing data tools

Read fragment information

Description

Ref: ArchR .tabixTotmp

Usage

tabixToH5SingleThread(
  tabixFile,
  tileChromSizes,
  outH5File,
  sampleName = NULL,
  barcodes = NULL
)

Arguments

tabixFile	string fragment file name, only tab/tab.gz file (.tabix should be in the same folder)
tileChromSizes	GenomeRanges, tiled ChromSizes
outH5File	string, filename of the output h5file
sampleName	string the sample corresponding to the fragment file
barcodes	vector of string, optional, barcodes we want
nChunk	integer partition each chrom into nChunk pieces

Value

outputH5File string name of the output file

beyondpie/smmtools documentation built on July 1, 2022, 4:33 a.m.