AppendPerCellSaturation: Append Per Cell Saturation

In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools

Append Per Cell Saturation

Description

Calculate and Append Per-cell Saturation to a Seurat Object

Usage

AppendPerCellSaturation(
  seuratObj,
  molInfoFile,
  cellbarcodePrefix = NULL,
  assayName = NULL,
  doPlot = TRUE
)

Arguments

seuratObj	The seurat object
molInfoFile	The 10x molecule_info.h5 file
cellbarcodePrefix	An optional string appended to the barcodes parsed from the molecule_info.h5 file. This is necessary if the seurat object has a prefix applied to cell barcodes. This value is directly concatenated and must include any delimiter. Note: if this is absent, but the seuratObj has the columns DatasetId or BarcodePrefix, the latter will be used.
assayName	An optional string indicating the assay these data are associated with. If null, they will use the DefaultAssay
doPlot	If true, plots summarizing saturation will be generated.

bimberlabinternal/CellMembrane documentation built on Oct. 16, 2024, 6:53 a.m.