FilterRawCounts: Perform Cell Filtering on the cells of the seurat object

In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools

Perform Cell Filtering on the cells of the seurat object

Description

This will perform filtering on the cells of the seurat object

Usage

FilterRawCounts(
  seuratObj,
  nCount_RNA.high = 20000,
  nCount_RNA.low = 1,
  nFeature.high = 3000,
  nFeature.low = 200,
  pMito.high = 0.15,
  pMito.low = 0
)

Arguments

seuratObj	A Seurat object.
nCount_RNA.high	Cells with nCount_RNA greater than this value will be filtered
nCount_RNA.low	Cells with nCount_RNA less than this value will be filtered
nFeature.high	Cells with nFeature greater than this value will be filtered
nFeature.low	Cells with nFeature less than this value will be filtered
pMito.high	Cells with percent mito greater than this value will be filtered
pMito.low	Cells with percent mito less than this value will be filtered

Value

The modified seurat object

bimberlabinternal/CellMembrane documentation built on Oct. 16, 2024, 6:53 a.m.