AvgExpression: Calculate Avg Expression
In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools
AvgExpression R Documentation
Calculate Avg Expression
Description
This is a wrapper around Seurat::AverageExpression, which computes the AverageExpression per group (all assays), then flattens this to a single data frame. It also saves library size and total cells per group.
Usage
AvgExpression(seuratObj, groupField, layer = "counts")
Arguments
seuratObj
The seurat object
groupField
The field on which to group. Must be present in seuratObj@meta.data
layer
The layer on which to calculate average expression
bimberlabinternal/CellMembrane documentation built on Nov. 15, 2024, 9:34 p.m.
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| AvgExpression | R Documentation |
Calculate Avg Expression
Description
This is a wrapper around Seurat::AverageExpression, which computes the AverageExpression per group (all assays), then flattens this to a single data frame. It also saves library size and total cells per group.
Usage
AvgExpression(seuratObj, groupField, layer = "counts")
Arguments
seuratObj |
The seurat object |
groupField |
The field on which to group. Must be present in seuratObj@meta.data |
layer |
The layer on which to calculate average expression |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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