CiteSeqDimRedux.Dist: Perform DimRedux on CiteSeq using euclidean distance

In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools

Perform DimRedux on CiteSeq using euclidean distance

Description

Perform DimRedux on CiteSeq using euclidean distance

Usage

CiteSeqDimRedux.Dist(
  seuratObj,
  assayName = "ADT",
  dist.method = "euclidean",
  print.plots = TRUE,
  performClrNormalization = TRUE,
  doUMAP = TRUE
)

Arguments

seuratObj	The seurat object
assayName	The name of the assay holding the ADT data.
dist.method	The method, passed to dist()
print.plots	If true, QC plots will be printed
performClrNormalization	If true, Seurat's CLR normalization will be performed. Otherwise this expected data to be pre-normalized
doUMAP	If true, RunUMAP will be performed on the ADT distance matrix.

bimberlabinternal/CellMembrane documentation built on Oct. 16, 2024, 6:53 a.m.