CalculateUcellPerFeature: CalculateUcellPerFeature
In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools
CalculateUcellPerFeature R Documentation
CalculateUcellPerFeature
Description
This will iterate all features of the given assay and calculate a per-feature Ucell score
Usage
CalculateUcellPerFeature(
seuratObj,
columnPrefix = NULL,
assayName = "ADT",
ncores = 1,
ignoreCachedRanks = TRUE
)
Arguments
seuratObj
The seurat object
columnPrefix
An optional prefix to be applied to the resulting column (which is otherwise the feature name)
assayName
The name of the assay
ncores
Passed directly to AddModuleScore_UCell
ignoreCachedRanks
If true, any previously cached ranked from UCell will be ignored
Value
A modified Seurat object.
bimberlabinternal/CellMembrane documentation built on Oct. 16, 2024, 6:53 a.m.
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| CalculateUcellPerFeature | R Documentation |
CalculateUcellPerFeature
Description
This will iterate all features of the given assay and calculate a per-feature Ucell score
Usage
CalculateUcellPerFeature(
seuratObj,
columnPrefix = NULL,
assayName = "ADT",
ncores = 1,
ignoreCachedRanks = TRUE
)
Arguments
seuratObj |
The seurat object |
columnPrefix |
An optional prefix to be applied to the resulting column (which is otherwise the feature name) |
assayName |
The name of the assay |
ncores |
Passed directly to AddModuleScore_UCell |
ignoreCachedRanks |
If true, any previously cached ranked from UCell will be ignored |
Value
A modified Seurat object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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