NanoString_Housekeeping_Normalization: NanoString_Housekeeping_Normalization

In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools

NanoString_Housekeeping_Normalization

Description

a normalization method that uses the housekeeping genes to generate size factors for normalization.

Usage

NanoString_Housekeeping_Normalization(
  seuratObj,
  assay = "RNA",
  targetAssayName = "Housekeeping"
)

Arguments

seuratObj	The Seurat object that holds the data to be normalized.
assay	The assay holding the raw data - the counts slot will be assumed to hold raw data.
targetAssayName	The assay name that the normalized data should be stored in.

Value

Returns a Seurat object containing normalized counts stored in the counts slot of the "Housekeeping" assay.

bimberlabinternal/CellMembrane documentation built on Dec. 25, 2024, 8:10 a.m.