CalculateTcrDiversity: Calculate TCR diversity
In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools
CalculateTcrDiversity R Documentation
Calculate TCR diversity
Description
Plot a diversity profile for each library in the data
Usage
CalculateTcrDiversity(inputData, order1 = 1, order2 = 200)
Arguments
inputData
The a data frame with the columns: sampleId, v_a_gene, v_b_gene, cdr3_a_aa, cdr3_b_aa, and clone_size
order1
The minimum order for calculating the generalized Simpson entropy.
order2
The maximum order for calculating the generalized Simpson entropy.
Value
A data frame with the results
bimberlabinternal/CellMembrane documentation built on Oct. 16, 2024, 6:53 a.m.
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| CalculateTcrDiversity | R Documentation |
Calculate TCR diversity
Description
Plot a diversity profile for each library in the data
Usage
CalculateTcrDiversity(inputData, order1 = 1, order2 = 200)
Arguments
inputData |
The a data frame with the columns: sampleId, v_a_gene, v_b_gene, cdr3_a_aa, cdr3_b_aa, and clone_size |
order1 |
The minimum order for calculating the generalized Simpson entropy. |
order2 |
The maximum order for calculating the generalized Simpson entropy. |
Value
A data frame with the results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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