CalculateTcrDiversityFromSeurat: Calculate TCR diversity from a seurat object
In bimberlabinternal/CellMembrane: A package with high-level wrappers and pipelines for single-cell RNA-seq tools
CalculateTcrDiversityFromSeurat R Documentation
Calculate TCR diversity from a seurat object
Description
Calculate TCR a diversity profile for each library in the data
Usage
CalculateTcrDiversityFromSeurat(
seuratObj,
groupField,
order1 = 1,
order2 = 200
)
Arguments
seuratObj
A seurat object with the following columns: TRA, TRA_V, TRB, TRB_V
groupField
The field that defines sample groups.
order1
The minimum order for calculating the generalized Simpson entropy.
order2
The maximum order for calculating the generalized Simpson entropy.
Value
A data frame with the results
bimberlabinternal/CellMembrane documentation built on Oct. 16, 2024, 6:53 a.m.
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| CalculateTcrDiversityFromSeurat | R Documentation |
Calculate TCR diversity from a seurat object
Description
Calculate TCR a diversity profile for each library in the data
Usage
CalculateTcrDiversityFromSeurat(
seuratObj,
groupField,
order1 = 1,
order2 = 200
)
Arguments
seuratObj |
A seurat object with the following columns: TRA, TRA_V, TRB, TRB_V |
groupField |
The field that defines sample groups. |
order1 |
The minimum order for calculating the generalized Simpson entropy. |
order2 |
The maximum order for calculating the generalized Simpson entropy. |
Value
A data frame with the results
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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