ClippedTranscripts-class: A container for clipped transcripts

In cancer-genomics/trellis: Somatic structural variant analysis

A container for clipped transcripts

Description

A container for clipped transcripts

Usage

ClippedTranscripts(
  transcripts,
  i,
  left = GRangesList(),
  right = GRangesList(),
  names = c("5prime", "3prime")
)

## S4 method for signature 'missing,missing'
ClippedTranscripts(
  transcripts,
  i,
  left = GRangesList(),
  right = GRangesList(),
  names = c("5prime", "3prime")
)

## S4 method for signature 'ClippedTranscripts'
left(x, ...)

## S4 method for signature 'ClippedTranscripts'
right(x, ...)

Arguments

transcripts	a Transcripts object
i	an integer vector
left	a GRangesList for the transcripts to the left of the junction
right	a GRangesList for the transcripts to the right of the junction
names	character vector indicating strand of transcripts ('5prime' or '3prime').
x	a ClippedTranscripts object
...	ignored

Slots

left

a GRangesList

right

a GRangesList

names

a character vector of transcript names

Examples

ClippedTranscripts()

cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.