annotateBlatRecords: Annotate blat records
In cancer-genomics/trellis: Somatic structural variant analysis
annotateBlatRecords R Documentation
Annotate blat records
Description
Annotate blat records
Usage
annotateBlatRecords(blat, tag.sequences)
Arguments
blat
data.frame of blat records from readBlat
tag.sequences
data.frame of read sequences
Examples
data(tags)
extdata <- system.file("extdata", package="svbams")
blat.file <- file.path(extdata, "blat_alignment.txt")
blat_aln <- readBlat(blat.file)
records <- annotateBlatRecords(blat_aln, tags)
annotateBlatRecords(records, tags)
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
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| annotateBlatRecords | R Documentation |
Annotate blat records
Description
Annotate blat records
Usage
annotateBlatRecords(blat, tag.sequences)
Arguments
blat |
|
tag.sequences |
|
Examples
data(tags)
extdata <- system.file("extdata", package="svbams")
blat.file <- file.path(extdata, "blat_alignment.txt")
blat_aln <- readBlat(blat.file)
records <- annotateBlatRecords(blat_aln, tags)
annotateBlatRecords(records, tags)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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