deletion_call: Creates a StructuralVariant object, linking genomic intervals...
In cancer-genomics/trellis: Somatic structural variant analysis

deletion_call

R Documentation

Creates a StructuralVariant object, linking genomic intervals (deletions) to read pairs supporting the rearrangement

Identifies somatic, focal hemizygous and homozygous deletions, then links these deletions with properly and improperly paired reads.

deletion_call(preprocess, gr_filters, param = DeletionParam())

`preprocess`	A `list` object generated by `preprocessData`
`gr_filters`	A `GRanges` object of germline CNVs and sequence-based filters identified by low mappability and/or GC content
`param`	A `DeletionParam` object