calls-method: Type of deletion

In cancer-genomics/trellis: Somatic structural variant analysis

Type of deletion

Description

An accessor for the deletion calls. The deletion calls are hemizygous, hemizygous+, homozygous, and homozygous+. The '+' denotes that improper read pairs support the deletion identified from the read depth analysis.

Usage

calls(object)

calls(object) <- value

## S4 method for signature 'StructuralVariant'
calls(object)

## S4 replacement method for signature 'StructuralVariant'
calls(object) <- value

Arguments

object	a StructuralVariant
value	a character string indicating the type of deletion

cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.