ExonSubset-class: Container for storing information to subset transcripts

In cancer-genomics/trellis: Somatic structural variant analysis

Container for storing information to subset transcripts

Description

Container for storing information to subset transcripts

Usage

inRearrangement.left(object)

inRearrangement.right(object)

name.left(object)

name.right(object)

ExonSubset(
  name.left = character(),
  inRearrangement.left = LogicalList(),
  name.right = character(),
  inRearrangement.right = LogicalList()
)

## S4 method for signature 'ExonSubset'
name.left(object)

## S4 method for signature 'ExonSubset'
name.right(object)

## S4 method for signature 'ExonSubset'
names(x)

## S4 method for signature 'ExonSubset'
inRearrangement.left(object)

## S4 method for signature 'ExonSubset'
inRearrangement.right(object)

Arguments

object	a ExonSubset object
name.left	name of left transcript
inRearrangement.left	LogicalList subsetting the left transcripts
name.right	name of right transcript
inRearrangement.right	LogicalList subsetting the right transcripts
x	an ExonSubset object

Value

a LogicalList

a LogicalList

Slots

name.left

character string

inRearrangement.left

a LogicalList

name.right

character string

inRearrangement.right

a LogicalList

Examples

ExonSubset()

cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.