fasta_unmapped: Write the read sequences of unmapped-mapped read pairs to...

View source: R/fasta-utils.R

fasta_unmappedR Documentation

Write the read sequences of unmapped-mapped read pairs to disk in fasta format

Description

Write the read sequences of unmapped-mapped read pairs to disk in fasta format

Usage

fasta_unmapped(dp, unmapped_read, id)

Arguments

dp

a DataPaths object

unmapped_read

a GRanges object

id

a length-one character vector for the sample id

Value

nothing is returned

See Also

See unmapped_read for extracting a GRanges representation of unmapped-mapped read pairs where the mapped read overlap with a set of query genomic intervals, such as candiate rearrangements.


cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.