fasta_unmapped: Write the read sequences of unmapped-mapped read pairs to...
In cancer-genomics/trellis: Somatic structural variant analysis
fasta_unmapped R Documentation
Write the read sequences of unmapped-mapped read pairs to disk in fasta format
Description
Write the read sequences of unmapped-mapped read pairs to disk in fasta format
Usage
fasta_unmapped(dp, unmapped_read, id)
Arguments
dp
a DataPaths object
unmapped_read
a GRanges object
id
a length-one character vector for the sample id
Value
nothing is returned
See Also
See unmapped_read for extracting a
GRanges representation of unmapped-mapped read pairs where
the mapped read overlap with a set of query genomic intervals,
such as candiate rearrangements.
cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.
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| fasta_unmapped | R Documentation |
Write the read sequences of unmapped-mapped read pairs to disk in fasta format
Description
Write the read sequences of unmapped-mapped read pairs to disk in fasta format
Usage
fasta_unmapped(dp, unmapped_read, id)
Arguments
dp |
a |
unmapped_read |
a |
id |
a length-one character vector for the sample id |
Value
nothing is returned
See Also
See unmapped_read for extracting a
GRanges representation of unmapped-mapped read pairs where
the mapped read overlap with a set of query genomic intervals,
such as candiate rearrangements.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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