aberrantSep: Assesses whether two reads in a pair are aberrantly separated...

View source: R/alignment-utils.R

aberrantSepR Documentation

Assesses whether two reads in a pair are aberrantly separated with respect to the reference genome

Description

Determines whether separation between first and last read in a GAlignmentPairs is greater than some distance.

Usage

aberrantSep(gpairs, distance = 10000)

Arguments

gpairs

a GAlignmentPairs object

distance

the minimum distance in base pairs between two reads in order to call them aberrantly separated

Details

Evaluates to TRUE if

Value

logical vector of the same length as gpairs


cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.