aberrantSep: Assesses whether two reads in a pair are aberrantly separated...
In cancer-genomics/trellis: Somatic structural variant analysis
View source: R/alignment-utils.R
aberrantSep R Documentation
Assesses whether two reads in a pair are aberrantly separated with respect to the reference genome
Description
Determines whether separation between first and last read in a
GAlignmentPairs is greater than some distance.
Usage
aberrantSep(gpairs, distance = 10000)
Arguments
gpairs
a GAlignmentPairs object
distance
the minimum distance in base pairs between two reads in
order to call them aberrantly separated
Details
Evaluates to TRUE if
Value
logical vector of the same length as gpairs
cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.
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View source: R/alignment-utils.R
| aberrantSep | R Documentation |
Assesses whether two reads in a pair are aberrantly separated with respect to the reference genome
Description
Determines whether separation between first and last read in a GAlignmentPairs is greater than some distance.
Usage
aberrantSep(gpairs, distance = 10000)
Arguments
gpairs |
a |
distance |
the minimum distance in base pairs between two reads in order to call them aberrantly separated |
Details
Evaluates to TRUE if
Value
logical vector of the same length as gpairs
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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