filterGermlineRear: Applies germline CNV and sequence-based filters for...

View source: R/rearlist-utils.R

filterGermlineRearR Documentation

Applies germline CNV and sequence-based filters for non-redundant identification of germline rearrangements

Description

Applies germline CNV and sequence-based filters for non-redundant identification of germline rearrangements

Usage

filterGermlineRear(object, params, germline_filters, return_stats = FALSE)

Arguments

object

A RearrangementList object

params

A RearrangementParams object

germline_filters

A GRanges object of germline CNVs and sequence-based filters

return_stats

length-one logical vector. For internal use only

See Also

See filterRearExperiment for a wrapper that saves filtered results. See filterRearrangementList for filtering somatic rearrangements.


cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.