filterGermlineRear: Applies germline CNV and sequence-based filters for...

In cancer-genomics/trellis: Somatic structural variant analysis

Applies germline CNV and sequence-based filters for non-redundant identification of germline rearrangements

Description

Applies germline CNV and sequence-based filters for non-redundant identification of germline rearrangements

Usage

filterGermlineRear(object, params, germline_filters, return_stats = FALSE)

Arguments

object	A RearrangementList object
params	A RearrangementParams object
germline_filters	A GRanges object of germline CNVs and sequence-based filters
return_stats	length-one logical vector. For internal use only

See Also

See filterRearExperiment for a wrapper that saves filtered results. See filterRearrangementList for filtering somatic rearrangements.

cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.