chromosome-methods: Extract autosomal (human) sequence levels
In cancer-genomics/trellis: Somatic structural variant analysis

autosomeNames

R Documentation

Extract autosomal (human) sequence levels

Description

Extract autosomal (human) sequence levels

Return seqnames of a GRanges object as a character vector

Usage

autosomeNames(object)

chromosome(object)

## S4 method for signature 'GRanges'
chromosome(object)

## S4 method for signature 'RangedSummarizedExperiment'
chromosome(object)

## S4 method for signature 'GAlignments'
chromosome(object)

## S4 method for signature 'StructuralVariant'
chromosome(object)

## S4 method for signature 'BamViews'
autosomeNames(object)

## S4 method for signature 'GRanges'
autosomeNames(object)