chromosome-methods: Extract autosomal (human) sequence levels

In cancer-genomics/trellis: Somatic structural variant analysis

Extract autosomal (human) sequence levels

Description

Extract autosomal (human) sequence levels

Return seqnames of a GRanges object as a character vector

Usage

autosomeNames(object)

chromosome(object)

## S4 method for signature 'GRanges'
chromosome(object)

## S4 method for signature 'RangedSummarizedExperiment'
chromosome(object)

## S4 method for signature 'GAlignments'
chromosome(object)

## S4 method for signature 'StructuralVariant'
chromosome(object)

## S4 method for signature 'BamViews'
autosomeNames(object)

## S4 method for signature 'GRanges'
autosomeNames(object)

Arguments

object

a GRanges object

cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.