filterGermlineRearList: Exclude linked tag cluster that overlap with germline CNVs or...
In cancer-genomics/trellis: Somatic structural variant analysis
View source: R/rearlist-utils.R
filterGermlineRearList R Documentation
Exclude linked tag cluster that overlap with germline CNVs or other
sequence artifacts
Description
This function is intended for internal use, primarily for
delineating rearrangements that may occur in the germline.
Usage
filterGermlineRearList(x, dirs, rp = RearrangementParams(), germline_filters)
Arguments
x
a RearrangementList
dirs
a DataPaths object
rp
a RearrangementParams object
germline_filters
a GRanges object of germline CNV and sequence filters
cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.
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View source: R/rearlist-utils.R
| filterGermlineRearList | R Documentation |
Exclude linked tag cluster that overlap with germline CNVs or other sequence artifacts
Description
This function is intended for internal use, primarily for delineating rearrangements that may occur in the germline.
Usage
filterGermlineRearList(x, dirs, rp = RearrangementParams(), germline_filters)
Arguments
x |
a |
dirs |
a |
rp |
a |
germline_filters |
a |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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