copynumber-methods: Accessor for 'copy' assays

In cancer-genomics/trellis: Somatic structural variant analysis

Accessor for 'copy' assays

Description

Extract matrix of log2-transformed estimates of copy number relative to autosomal mode or median

Usage

copynumber(object)

copynumber(object) <- value

## S4 method for signature 'RangedSummarizedExperiment'
copynumber(object)

## S4 replacement method for signature 'RangedSummarizedExperiment,matrix'
copynumber(object) <- value

## S4 method for signature 'StructuralVariant'
copynumber(object)

## S4 replacement method for signature 'StructuralVariant,ANY'
copynumber(object) <- value

Arguments

object	A RangedSummarizedExperiment
value	matrix of copy number estimates

cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.