blat_unmapped: BLAT alignment of reads that were unmapped by ELAND

blat_unmappedR Documentation

BLAT alignment of reads that were unmapped by ELAND

Description

This is a subset of reads that were involved in an unmapped-mapped pair. The mapped reads were near a rearrangement supported by improperly paired mapped-mapped reads ('mapped-mapped' indicates both reads were alignmed by ELAND). We used BLAT to assess whether a split read alignment for the unmapped read supports the new sequence junction.

Format

a data.frame of blat records


cancer-genomics/trellis documentation built on Aug. 20, 2024, 5:48 p.m.