blat_unmapped: BLAT alignment of reads that were unmapped by ELAND
In cancer-genomics/trellis: Somatic structural variant analysis
blat_unmapped R Documentation
BLAT alignment of reads that were unmapped by ELAND
Description
This is a subset of reads that were involved in an unmapped-mapped
pair. The mapped reads were near a rearrangement supported by
improperly paired mapped-mapped reads ('mapped-mapped' indicates
both reads were alignmed by ELAND). We used BLAT to assess whether
a split read alignment for the unmapped read supports the new
sequence junction.
Format
a data.frame of blat records
cancer-genomics/trellis documentation built on Feb. 2, 2023, 7:04 p.m.
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| blat_unmapped | R Documentation |
BLAT alignment of reads that were unmapped by ELAND
Description
This is a subset of reads that were involved in an unmapped-mapped pair. The mapped reads were near a rearrangement supported by improperly paired mapped-mapped reads ('mapped-mapped' indicates both reads were alignmed by ELAND). We used BLAT to assess whether a split read alignment for the unmapped read supports the new sequence junction.
Format
a data.frame of blat records
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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