CAGEr-class: CAGEr objects
In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
CAGEr-class R Documentation
CAGEr objects
Description
The CAGEr package provides one class of objects to load, contain and
process CAGE data: the CAGEexp class, introduced 2017, which is based on the
MultiAssayExperiment class. In comparison with the original CAGEset
class (removed in 2021) CAGEexp objects benefit from a a more efficient data storage, using
DataFrames of run-length-encoded (Rle) integers, allowing for the
loading and use of much larger transcriptome datasets.
References
Haberle V, Forrest ARR, Hayashizaki Y, Carninci P and Lenhard B
(2015). “CAGEr: precise TSS data retrieval and high-resolution
promoterome mining for integrative analyses.” Nucleic Acids Research,
43, pp. e51., http://nar.oxfordjournals.org/content/43/8/e51
charles-plessy/CAGEr documentation built on Oct. 27, 2024, 10:11 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| CAGEr-class | R Documentation |
CAGEr objects
Description
The CAGEr package provides one class of objects to load, contain and
process CAGE data: the CAGEexp class, introduced 2017, which is based on the
MultiAssayExperiment class. In comparison with the original CAGEset
class (removed in 2021) CAGEexp objects benefit from a a more efficient data storage, using
DataFrames of run-length-encoded (Rle) integers, allowing for the
loading and use of much larger transcriptome datasets.
References
Haberle V, Forrest ARR, Hayashizaki Y, Carninci P and Lenhard B (2015). “CAGEr: precise TSS data retrieval and high-resolution promoterome mining for integrative analyses.” Nucleic Acids Research, 43, pp. e51., http://nar.oxfordjournals.org/content/43/8/e51
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.