bam2CTSS: bam2CTSS
In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
View source: R/ImportMethods.R
bam2CTSS R Documentation
bam2CTSS
Description
Converts from BAM to CTSS
Usage
bam2CTSS(gr, removeFirstG, correctSystematicG, genome)
Arguments
gr
A GRanges object returned by import.bam.
removeFirstG
See getCTSS().
correctSystematicG
See getCTSS().
genome
See coerceInBSgenome().
Details
Converts genomic ranges representing SAM/BAM alignments into a CTSS object.
Value
Returns a CTSS object.
See Also
Other loadFileIntoGPos:
import.CTSS(),
import.bam(),
import.bam.ctss(),
import.bedCTSS(),
import.bedScore(),
import.bedmolecule(),
loadFileIntoGPos(),
moleculesGR2CTSS()
charles-plessy/CAGEr documentation built on Aug. 2, 2024, 4:35 p.m.
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View source: R/ImportMethods.R
| bam2CTSS | R Documentation |
bam2CTSS
Description
Converts from BAM to CTSS
Usage
bam2CTSS(gr, removeFirstG, correctSystematicG, genome)
Arguments
gr |
A |
removeFirstG |
See getCTSS(). |
correctSystematicG |
See getCTSS(). |
genome |
See coerceInBSgenome(). |
Details
Converts genomic ranges representing SAM/BAM alignments into a CTSS object.
Value
Returns a CTSS object.
See Also
Other loadFileIntoGPos:
import.CTSS(),
import.bam(),
import.bam.ctss(),
import.bedCTSS(),
import.bedScore(),
import.bedmolecule(),
loadFileIntoGPos(),
moleculesGR2CTSS()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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