coerceInBSgenome: coerceInBSgenome
In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
View source: R/ImportMethods.R
coerceInBSgenome R Documentation
coerceInBSgenome
Description
A private (non-exported) function to discard any range that is
not compatible with the CAGEr object's BSgenome.
Usage
coerceInBSgenome(gr, genome)
Arguments
gr
The genomic ranges to coerce.
genome
The name of a BSgenome package, which must me installed,
or NULL to skip coercion.
Value
A GRanges object in which every range is guaranteed to be compatible
with the given BSgenome object. The sequnames of the GRanges are also set
accordingly to the BSgenome.
charles-plessy/CAGEr documentation built on Oct. 27, 2024, 10:11 p.m.
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View source: R/ImportMethods.R
| coerceInBSgenome | R Documentation |
coerceInBSgenome
Description
A private (non-exported) function to discard any range that is not compatible with the CAGEr object's BSgenome.
Usage
coerceInBSgenome(gr, genome)
Arguments
gr |
The genomic ranges to coerce. |
genome |
The name of a BSgenome package, which must me installed,
or |
Value
A GRanges object in which every range is guaranteed to be compatible with the given BSgenome object. The sequnames of the GRanges are also set accordingly to the BSgenome.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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