CTSScumulativesTagClusters: Get/set CTSS cumulative TC or CC data

In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

Get/set CTSS cumulative TC or CC data

Description

Accessor function.

Usage

CTSScumulativesTagClusters(object, samples = NULL)

## S4 method for signature 'CAGEexp'
CTSScumulativesTagClusters(object, samples = NULL)

CTSScumulativesCC(object, samples = NULL)

## S4 method for signature 'CAGEexp'
CTSScumulativesCC(object, samples = NULL)

CTSScumulativesTagClusters(object) <- value

## S4 replacement method for signature 'CAGEexp'
CTSScumulativesTagClusters(object) <- value

Arguments

object	A CAGEexp object.
samples	One or more valid sample names.
value	CTSScumulativesTagClusters data

Value

List of numeric Rle.

See Also

Other CAGEr clusters functions: CustomConsensusClusters(), aggregateTagClusters(), consensusClustersDESeq2(), consensusClustersGR(), cumulativeCTSSdistribution(), distclu(), paraclu(), plotInterquantileWidth(), quantilePositions(), tagClustersGR()

Other CAGEr accessor methods: CTSScoordinatesGR(), CTSSnormalizedTpmDF(), CTSStagCountDF(), GeneExpDESeq2(), GeneExpSE(), consensusClustersGR(), expressionClasses(), filteredCTSSidx(), genomeName(), inputFiles(), inputFilesType(), librarySizes(), sampleLabels(), seqNameTotalsSE(), tagClustersGR()

charles-plessy/CAGEr documentation built on Aug. 2, 2024, 4:35 p.m.