import.bedCTSS: import.bedCTSS

In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining

import.bedCTSS

Description

Imports a BED file where each line represents a single base, with a score counting the number of CAGE transcription start sites (CTSS).

Usage

import.bedCTSS(filepath)

Arguments

filepath

The path to the BED file.

Value

A GRanges object where each line represents one nucleotide.

See Also

Other loadFileIntoGPos: bam2CTSS(), import.CTSS(), import.bam(), import.bam.ctss(), import.bedScore(), import.bedmolecule(), loadFileIntoGPos(), moleculesGR2CTSS()

Examples

# TODO: add exmaple file
# import.BED(system.file("extdata", "example.bed", package = "CAGEr"))

charles-plessy/CAGEr documentation built on Oct. 27, 2024, 10:11 p.m.