import.bedScore: import.bedScore
In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
View source: R/ImportMethods.R
import.bedScore R Documentation
import.bedScore
Description
Imports a BED file where the score indicates a number of counts
for a given alignment.
Usage
import.bedScore(filepath)
Arguments
filepath
The path to the BED file.
Value
A GRanges object where each line represents one nucleotide.
See Also
Other loadFileIntoGPos:
bam2CTSS(),
import.CTSS(),
import.bam.ctss(),
import.bam(),
import.bedCTSS(),
import.bedmolecule(),
loadFileIntoGPos(),
moleculesGR2CTSS()
Examples
# TODO: add exmaple file
# import.bedScore(system.file("extdata", "example.bed", package = "CAGEr"))
charles-plessy/CAGEr documentation built on Nov. 4, 2023, 11:57 a.m.
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View source: R/ImportMethods.R
| import.bedScore | R Documentation |
import.bedScore
Description
Imports a BED file where the score indicates a number of counts for a given alignment.
Usage
import.bedScore(filepath)
Arguments
filepath |
The path to the BED file. |
Value
A GRanges object where each line represents one nucleotide.
See Also
Other loadFileIntoGPos:
bam2CTSS(),
import.CTSS(),
import.bam.ctss(),
import.bam(),
import.bedCTSS(),
import.bedmolecule(),
loadFileIntoGPos(),
moleculesGR2CTSS()
Examples
# TODO: add exmaple file
# import.bedScore(system.file("extdata", "example.bed", package = "CAGEr"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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