consensusClustersTpm: Extracting consensus clusters tpm matrix from CAGEr object
In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
consensusClustersTpm R Documentation
Extracting consensus clusters tpm matrix from CAGEr object
Description
Extracts a table with normalized CAGE tag values for consensus
clusters across all samples from a CAGEr object.
Usage
consensusClustersTpm(object)
## S4 method for signature 'CAGEexp'
consensusClustersTpm(object)
Arguments
object
A CAGEr object.
Value
Returns the matrix of normalized expression values of CAGE clusters
across all samples.
Author(s)
Vanja Haberle
See Also
consensusClustersSE
Other CAGEr clustering methods:
distclu(),
paraclu()
Examples
head(consensusClustersTpm(exampleCAGEexp))
charles-plessy/CAGEr documentation built on Oct. 27, 2024, 10:11 p.m.
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| consensusClustersTpm | R Documentation |
Extracting consensus clusters tpm matrix from CAGEr object
Description
Extracts a table with normalized CAGE tag values for consensus
clusters across all samples from a CAGEr object.
Usage
consensusClustersTpm(object)
## S4 method for signature 'CAGEexp'
consensusClustersTpm(object)
Arguments
object |
A CAGEr object. |
Value
Returns the matrix of normalized expression values of CAGE clusters
across all samples.
Author(s)
Vanja Haberle
See Also
consensusClustersSE
Other CAGEr clustering methods:
distclu(),
paraclu()
Examples
head(consensusClustersTpm(exampleCAGEexp))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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