import.CTSS: import.CTSS
In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
View source: R/ImportMethods.R
import.CTSS R Documentation
import.CTSS
Description
Imports a "CTSS" file in a GPos object
Usage
import.CTSS(filepath)
Arguments
filepath
The path to the "CTSS" file.
Note that the format of the "CTSS" files handled in this function is not
the same as the FANTOM5 "CTSS" files (which are plain BED).
See Also
Other loadFileIntoGPos:
bam2CTSS(),
import.bam.ctss(),
import.bam(),
import.bedCTSS(),
import.bedScore(),
import.bedmolecule(),
loadFileIntoGPos(),
moleculesGR2CTSS()
Examples
CAGEr:::import.CTSS(system.file("extdata", "Zf.high.chr17.ctss", package = "CAGEr"))
charles-plessy/CAGEr documentation built on Nov. 4, 2023, 11:57 a.m.
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View source: R/ImportMethods.R
| import.CTSS | R Documentation |
import.CTSS
Description
Imports a "CTSS" file in a GPos object
Usage
import.CTSS(filepath)
Arguments
filepath |
The path to the "CTSS" file. Note that the format of the "CTSS" files handled in this function is not the same as the FANTOM5 "CTSS" files (which are plain BED). |
See Also
Other loadFileIntoGPos:
bam2CTSS(),
import.bam.ctss(),
import.bam(),
import.bedCTSS(),
import.bedScore(),
import.bedmolecule(),
loadFileIntoGPos(),
moleculesGR2CTSS()
Examples
CAGEr:::import.CTSS(system.file("extdata", "Zf.high.chr17.ctss", package = "CAGEr"))
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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