GeneExpSE: Retreives the SummarizedExperiment containing gene expression...
In charles-plessy/CAGEr: Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome mining
GeneExpSE R Documentation
Retreives the SummarizedExperiment containing gene expression levels.
Description
Get or set a SummarizedExperiment using the gene expression
data in the experiment slot geneExpMatrix and the sample metadata
of the CAGEexp object.
Usage
GeneExpSE(object)
## S4 method for signature 'CAGEexp'
GeneExpSE(object)
Arguments
object
A CAGEexp object.
Author(s)
Charles Plessy
See Also
Other CAGEr accessor methods:
CTSSclusteringMethod(),
CTSScoordinatesGR(),
CTSScumulativesTagClusters(),
CTSSnormalizedTpmDF(),
CTSStagCountDF(),
GeneExpDESeq2(),
consensusClustersGR(),
expressionClasses(),
genomeName(),
inputFilesType(),
inputFiles(),
librarySizes(),
sampleLabels(),
seqNameTotalsSE(),
tagClustersGR()
Examples
GeneExpSE(exampleCAGEexp)
charles-plessy/CAGEr documentation built on Nov. 4, 2023, 11:57 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| GeneExpSE | R Documentation |
Retreives the SummarizedExperiment containing gene expression levels.
Description
Get or set a SummarizedExperiment using the gene expression
data in the experiment slot geneExpMatrix and the sample metadata
of the CAGEexp object.
Usage
GeneExpSE(object)
## S4 method for signature 'CAGEexp'
GeneExpSE(object)
Arguments
object |
A |
Author(s)
Charles Plessy
See Also
Other CAGEr accessor methods:
CTSSclusteringMethod(),
CTSScoordinatesGR(),
CTSScumulativesTagClusters(),
CTSSnormalizedTpmDF(),
CTSStagCountDF(),
GeneExpDESeq2(),
consensusClustersGR(),
expressionClasses(),
genomeName(),
inputFilesType(),
inputFiles(),
librarySizes(),
sampleLabels(),
seqNameTotalsSE(),
tagClustersGR()
Examples
GeneExpSE(exampleCAGEexp)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.