celdaHeatmap.celda_C: Heatmap for celda_C

In compbiomed/celda: CEllular Latent Dirichlet Allocation

Description

Renders an expression heatmap to visualize 'celda_C()' results. Features to include in the heatmap must be supplied.

Usage

## S3 method for class 'celda_C'
celdaHeatmap(counts, celda.mod, feature.ix, ...)

Arguments

counts	Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celda.mod'.
celda.mod	Celda object of class 'celda_C'.
feature.ix	Integer vector. Indices of features to plot, such the top features from a differential expression analysis.
...	Additional parameters.

Value

list A list containing dendrograms and the heatmap grob

See Also

'celda_C()' for clustering cells and 'celdaTsne()' for generating 2-dimensional coordinates

Examples

celdaHeatmap(celda.C.sim$counts, celda.C.mod)

compbiomed/celda documentation built on May 25, 2019, 3:58 a.m.