clusterProbability.celda_C: Conditional probabilities for cells in subpopulations from a...
In compbiomed/celda: CEllular Latent Dirichlet Allocation
Description
Usage
Arguments
Value
See Also
Examples
Description
Calculates the conditional probability of each cell belonging to each subpopulation given all other cell cluster assignments in a 'celda_C()' result.
Usage
1
2
## S3 method for class 'celda_C'
clusterProbability(counts, celda.mod, log = FALSE, ...)
Arguments
counts
Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celda.mod'.
celda.mod
Celda object of class 'celda_C'.
log
Logical. If FALSE, then the normalized conditional probabilities will be returned. If TRUE, then the unnormalized log probabilities will be returned. Default FALSE.
...
Additional parameters.
Value
A list containging a matrix for the conditional cell subpopulation cluster probabilities.
See Also
'celda_C()' for clustering cells
Examples
1
cluster.prob = clusterProbability(celda.C.sim$counts, celda.C.mod)
compbiomed/celda documentation built on May 25, 2019, 3:58 a.m.
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Description Usage Arguments Value See Also Examples
Description
Calculates the conditional probability of each cell belonging to each subpopulation given all other cell cluster assignments in a 'celda_C()' result.
Usage
1 2 | ## S3 method for class 'celda_C'
clusterProbability(counts, celda.mod, log = FALSE, ...)
|
Arguments
counts |
Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celda.mod'. |
celda.mod |
Celda object of class 'celda_C'. |
log |
Logical. If FALSE, then the normalized conditional probabilities will be returned. If TRUE, then the unnormalized log probabilities will be returned. Default FALSE. |
... |
Additional parameters. |
Value
A list containging a matrix for the conditional cell subpopulation cluster probabilities.
See Also
'celda_C()' for clustering cells
Examples
1 | cluster.prob = clusterProbability(celda.C.sim$counts, celda.C.mod)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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