celdaHeatmap.celda_G: Heatmap for celda_CG

Description Usage Arguments Value See Also Examples

View source: R/celda_G.R

Description

Renders an expression heatmap to visualize 'celda_CG()' results. The top 'nfeatures' for each module will be included in the heatmap.

Usage

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## S3 method for class 'celda_G'
celdaHeatmap(counts, celda.mod, nfeatures = 25, ...)

Arguments

counts

Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celda.mod'.

celda.mod

Celda object of class 'celda_G'.

nfeatures

Integer. Maximum number of features to select for each module. Default 25.

...

Additional parameters.

Value

list A list containing the dendrograms and the heatmap grob

See Also

'celda_G()' for clustering features and 'celdaTsne()' for generating 2-dimensional coordinates

Examples

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compbiomed/celda documentation built on May 25, 2019, 3:58 a.m.