celdaHeatmap.celda_G: Heatmap for celda_CG

In compbiomed/celda: CEllular Latent Dirichlet Allocation

Description

Renders an expression heatmap to visualize 'celda_CG()' results. The top 'nfeatures' for each module will be included in the heatmap.

Usage

## S3 method for class 'celda_G'
celdaHeatmap(counts, celda.mod, nfeatures = 25, ...)

Arguments

counts	Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celda.mod'.
celda.mod	Celda object of class 'celda_G'.
nfeatures	Integer. Maximum number of features to select for each module. Default 25.
...	Additional parameters.

Value

list A list containing the dendrograms and the heatmap grob

See Also

'celda_G()' for clustering features and 'celdaTsne()' for generating 2-dimensional coordinates

Examples

celdaHeatmap(celda.G.sim$counts, celda.G.mod)

compbiomed/celda documentation built on May 25, 2019, 3:58 a.m.