celdaProbabilityMap.celda_C: Probability map for a celda_C model

In compbiomed/celda: CEllular Latent Dirichlet Allocation

Description

Renders probability and relative expression heatmaps to visualize the relationship between cell populations and samples.

Usage

## S3 method for class 'celda_C'
celdaProbabilityMap(counts, celda.mod, level = c("sample"),
  ...)

Arguments

counts	Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celda.mod'.
celda.mod	Celda object of class 'celda_C'.
level	Character. 'sample' will display the absolute probabilities and relative normalized abundance of each cell population in each sample. Default 'sample'.
...	Additional parameters.

Value

A grob containing the specified plots

See Also

'celda_C()' for clustering cells

Examples

celdaProbabilityMap(celda.C.sim$counts, celda.C.mod)

compbiomed/celda documentation built on May 25, 2019, 3:58 a.m.