celdaHeatmap.celda_CG: Heatmap for celda_CG
In compbiomed/celda: CEllular Latent Dirichlet Allocation
Description
Usage
Arguments
Value
See Also
Examples
Description
Renders an expression heatmap to visualize 'celda_CG()' results. The top 'nfeatures' for each module will be included in the heatmap.
Usage
1
2
## S3 method for class 'celda_CG'
celdaHeatmap(counts, celda.mod, nfeatures = 25, ...)
Arguments
counts
Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celda.mod'.
celda.mod
Celda object of class 'celda_CG'.
nfeatures
Integer. Maximum number of features to select for each module. Default 25.
...
Additional parameters.
Value
A list containing dendrograms and the heatmap grob
See Also
'celda_CG()' for clustering features and cells and 'celdaTsne()' for generating 2-dimensional coordinates
Examples
1
celdaHeatmap(celda.CG.sim$counts, celda.CG.mod)
compbiomed/celda documentation built on May 25, 2019, 3:58 a.m.
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Description Usage Arguments Value See Also Examples
Description
Renders an expression heatmap to visualize 'celda_CG()' results. The top 'nfeatures' for each module will be included in the heatmap.
Usage
1 2 | ## S3 method for class 'celda_CG'
celdaHeatmap(counts, celda.mod, nfeatures = 25, ...)
|
Arguments
counts |
Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celda.mod'. |
celda.mod |
Celda object of class 'celda_CG'. |
nfeatures |
Integer. Maximum number of features to select for each module. Default 25. |
... |
Additional parameters. |
Value
A list containing dendrograms and the heatmap grob
See Also
'celda_CG()' for clustering features and cells and 'celdaTsne()' for generating 2-dimensional coordinates
Examples
1 | celdaHeatmap(celda.CG.sim$counts, celda.CG.mod)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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