Files in compbiomed/celda
CEllular Latent Dirichlet Allocation

.Rbuildignore
.gitignore
.travis.yml
CONDUCT.md
DESCRIPTION
LICENSE
NAMESPACE
NOTICE
R/RcppExports.R R/StateHeatmap.R R/celdaGridSearch.R R/celda_C.R R/celda_CG.R R/celda_G.R R/celda_functions.R R/celda_heatmap.R R/celda_list.R R/data.R R/diffExp.R R/feature_selection.R R/matrixSums.R R/model_performance.R R/plot_dr.R R/s3_generics.R R/semi_pheatmap.R R/split_clusters.R README.md
data/calc_perplexity.rda
data/calc_perplexity2.rda
data/pbmc_data.rda
data/pbmc_res.rda
data/sample.cells.rda
extdata/cmatp
extdata/test.pdf
extdata/test.png
inst/doc/celda-analysis.R inst/doc/celda-analysis.Rmd
inst/doc/celda-analysis.html
man/available_models.Rd man/cC.decomposeCounts.Rd man/cCG.decomposeCounts.Rd man/cG.decomposeCounts.Rd man/calc.perplexity.Rd man/calc.perplexity2.Rd man/calculateLoglikFromVariables.Rd man/calculateLoglikFromVariables.celda_C.Rd man/calculateLoglikFromVariables.celda_CG.Rd man/calculateLoglikFromVariables.celda_G.Rd man/calculatePerplexity.Rd man/calculatePerplexityWithResampling.Rd man/calculateTsne.Rd man/celda.Rd man/celdaGridSearch.Rd man/celdaHeatmap.Rd man/celdaHeatmap.celda_C.Rd man/celdaHeatmap.celda_CG.Rd man/celdaHeatmap.celda_G.Rd man/celdaProbabilityMap.Rd man/celdaProbabilityMap.celda_C.Rd man/celdaProbabilityMap.celda_CG.Rd man/celdaTsne.Rd man/celdaTsne.celda_C.Rd man/celdaTsne.celda_CG.Rd man/celdaTsne.celda_G.Rd man/celda_C.Rd man/celda_CG.Rd man/celda_G.Rd man/clusterProbability.Rd man/clusterProbability.celda_C.Rd man/clusterProbability.celda_CG.Rd man/clusterProbability.celda_G.Rd man/compareCountMatrix.Rd man/completeLogLikelihood.Rd man/differentialExpression.Rd man/distinct_colors.Rd man/eigenMatMultInt.Rd man/factorizeMatrix.Rd man/factorizeMatrix.celda_C.Rd man/factorizeMatrix.celda_CG.Rd man/factorizeMatrix.celda_G.Rd man/featureModuleLookup.Rd man/featureModuleLookup.celda_C.Rd man/featureModuleLookup.celda_CG.Rd man/featureModuleLookup.celda_G.Rd man/filterCeldaList.Rd man/finalClusterAssignment.Rd man/finalLogLikelihood.Rd man/getK.Rd man/getK.celda_C.Rd man/getK.celda_CG.Rd man/getK.celda_G.Rd man/getL.Rd man/getL.celda_C.Rd man/getL.celda_CG.Rd man/getL.celda_G.Rd man/moduleHeatmap.Rd man/normalizeCounts.Rd man/pbmc_res.Rd man/pbmc_select.Rd man/plotDimReduceCluster.Rd man/plotDimReduceGene.Rd man/plotDimReduceGrid.Rd man/plotDimReduceState.Rd man/plotGridSearchPerplexity.Rd man/plotGridSearchPerplexity.celda_C.Rd man/plotGridSearchPerplexity.celda_CG.Rd man/plotGridSearchPerplexity.celda_G.Rd man/recodeClusterY.Rd man/recodeClusterZ.Rd man/renderCeldaHeatmap.Rd man/runParams.Rd man/sample.cells.Rd man/seed.Rd man/selectBestModel.Rd man/semi_pheatmap.Rd man/simulateCells.Rd man/simulateCells.celda_C.Rd man/simulateCells.celda_CG.Rd man/simulateCells.celda_G.Rd man/topRank.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/eigenMatMultInt.cpp
src/matrixSums.c
tests/celdaC.rda
tests/celdaCG.rda
tests/celdaCGsim.rda
tests/celdaCsim.rda
tests/celdaG.rda
tests/celdaGsim.rda
tests/testthat.R tests/testthat/test-celda_C.R tests/testthat/test-celda_CG.R tests/testthat/test-celda_G.R tests/testthat/test-celda_list.R tests/testthat/test-linter.R tests/testthat/test-model_performance.R vignettes/celda-analysis.Rmd
compbiomed/celda documentation built on Aug. 29, 2018, 10:24 p.m.