Files in compbiomed/celda
CEllular Latent Dirichlet Allocation
.Rbuildignore
.gitignore
.travis.yml
CONDUCT.md
DESCRIPTION
LICENSE
NAMESPACE
NEWS
NOTICE
R/RcppExports.R
R/StateHeatmap.R
R/celdaGridSearch.R
R/celda_C.R
R/celda_CG.R
R/celda_G.R
R/celda_functions.R
R/celda_heatmap.R
R/data.R
R/decon.R
R/diffExp.R
R/feature_selection.R
R/initialize_clusters.R
R/matrixSums.R
R/model_performance.R
R/plot_dr.R
R/s3_generics.R
R/semi_pheatmap.R
R/split_clusters.R
README.md
_pkgdown.yml
data/celda.C.mod.rda
data/celda.C.sim.rda
data/celda.CG.grid.search.res.rda
data/celda.CG.mod.rda
data/celda.CG.sim.rda
data/celda.G.mod.rda
data/celda.G.sim.rda
data/contamination.sim.rda
data/sample.cells.rda
man/DeconX.Rd
man/available_models.Rd
man/celda.C.mod.Rd
man/celda.C.sim.Rd
man/celda.CG.grid.search.res.Rd
man/celda.CG.mod.Rd
man/celda.CG.sim.Rd
man/celda.G.mod.Rd
man/celda.G.sim.Rd
man/celda.Rd
man/celdaGridSearch.Rd
man/celdaHeatmap.Rd
man/celdaHeatmap.celda_C.Rd
man/celdaHeatmap.celda_CG.Rd
man/celdaHeatmap.celda_G.Rd
man/celdaProbabilityMap.Rd
man/celdaProbabilityMap.celda_C.Rd
man/celdaProbabilityMap.celda_CG.Rd
man/celdaTsne.Rd
man/celdaTsne.celda_C.Rd
man/celdaTsne.celda_CG.Rd
man/celdaTsne.celda_G.Rd
man/celda_C.Rd
man/celda_CG.Rd
man/celda_G.Rd
man/clusterProbability.Rd
man/clusterProbability.celda_C.Rd
man/clusterProbability.celda_CG.Rd
man/clusterProbability.celda_G.Rd
man/compareCountMatrix.Rd
man/completeLogLikelihood.Rd
man/contamination.sim.Rd
man/differentialExpression.Rd
man/distinct_colors.Rd
man/eigenMatMultInt.Rd
man/factorizeMatrix.Rd
man/factorizeMatrix.celda_C.Rd
man/factorizeMatrix.celda_CG.Rd
man/factorizeMatrix.celda_G.Rd
man/fastNormProp.Rd
man/fastNormPropLog.Rd
man/fastNormPropSqrt.Rd
man/featureModuleLookup.Rd
man/featureModuleLookup.celda_C.Rd
man/featureModuleLookup.celda_CG.Rd
man/featureModuleLookup.celda_G.Rd
man/featureModuleTable.Rd
man/finalLogLikelihood.Rd
man/logLikelihood.Rd
man/logLikelihood.celda_C.Rd
man/logLikelihood.celda_CG.Rd
man/logLikelihood.celda_G.Rd
man/moduleHeatmap.Rd
man/normalizeCounts.Rd
man/perplexity.Rd
man/perplexity.celda_C.Rd
man/perplexity.celda_CG.Rd
man/perplexity.celda_G.Rd
man/plotDimReduceCluster.Rd
man/plotDimReduceFeature.Rd
man/plotDimReduceGrid.Rd
man/plotDimReduceModule.Rd
man/plotGridSearchPerplexity.Rd
man/plotGridSearchPerplexity.celda_C.Rd
man/plotGridSearchPerplexity.celda_CG.Rd
man/plotGridSearchPerplexity.celda_G.Rd
man/plotHeatmap.Rd
man/recodeClusterY.Rd
man/recodeClusterZ.Rd
man/resamplePerplexity.Rd
man/runParams.Rd
man/sample.cells.Rd
man/selectBestModel.Rd
man/semi_pheatmap.Rd
man/simulateCells.Rd
man/simulateCells.celda_C.Rd
man/simulateCells.celda_CG.Rd
man/simulateCells.celda_G.Rd
man/simulateObservedMatrix.Rd
man/subsetCeldaList.Rd
man/topRank.Rd
man/violinPlot.Rd
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/eigenMatMultInt.cpp
src/matrixNorm.cpp
src/matrixSums.c
tests/testthat.R
tests/testthat/Rplots.pdf
tests/testthat/test-celda-functions.R
tests/testthat/test-celda_C.R
tests/testthat/test-celda_CG.R
tests/testthat/test-celda_G.R
tests/testthat/test-decon.R
tests/testthat/test-intialize_cluster.R
tests/testthat/test-linter.R
tests/testthat/test-matrixSums.R
vignettes/celda-analysis.Rmd
