simulateCells: Simulate count data from the celda generative models.

In compbiomed/celda: CEllular Latent Dirichlet Allocation

Description

This function generates a list containing a simulated counts matrix, as well as various parameters used in the simulation which can be useful for running celda. The user must provide the desired model (one of celda_C, celda_G, celda_CG) as well as any desired tuning parameters for those model's simulation functions as detailed below.

Usage

simulateCells(model, ...)

Arguments

model	Character. Options available in 'celda::available.models'.
...	Additional parameters.

Value

List. Contains the simulated counts matrix, derived cell cluster assignments, the provided parameters, and estimated Dirichlet distribution parameters for the model.

Examples

dim(celda.CG.sim$counts)

compbiomed/celda documentation built on May 25, 2019, 3:58 a.m.