featureModuleLookup: Obtain the gene module of a gene of interest

In compbiomed/celda: CEllular Latent Dirichlet Allocation

Description

This function will output the corresponding feature module for a specified list of genes from a celda model.

Usage

featureModuleLookup(counts, celda.mod, feature, exact.match = TRUE)

Arguments

counts	Integer matrix. Rows represent features and columns represent cells. This matrix should be the same as the one used to generate 'celda.mod'.
celda.mod	Model of class "celda_G" or "celda_CG".
feature	Character vector. Identify feature modules for the specified feature names.
exact.match	Logical. Whether to look for exact match of the gene name within counts matrix. Default TRUE.

Value

List. Each entry corresponds to the feature module determined for the provided features

Examples

featureModuleLookup(counts = celda.CG.sim$counts, 
                    celda.mod = celda.CG.mod, "Gene_1")

compbiomed/celda documentation built on May 25, 2019, 3:58 a.m.