plotGridSearchPerplexity: Visualize perplexity of every model in a celda_list, by...
In compbiomed/celda: CEllular Latent Dirichlet Allocation
Description
Usage
Arguments
Value
Examples
View source: R/model_performance.R
Description
Visualize perplexity of every model in a celda_list, by unique K/L combinations
Usage
1
plotGridSearchPerplexity(celda.list)
Arguments
celda.list
Object of class 'celda_list'.
Value
A ggplot plot object showing perplexity as a function of clustering parameters.
Examples
1
2
3
4
## Run various combinations of parameters with 'celdaGridSearch'
celda.CG.grid.search.res = resamplePerplexity(celda.CG.sim$counts,
celda.CG.grid.search.res)
plotGridSearchPerplexity(celda.CG.grid.search.res)
compbiomed/celda documentation built on May 25, 2019, 3:58 a.m.
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Description Usage Arguments Value Examples
View source: R/model_performance.R
Description
Visualize perplexity of every model in a celda_list, by unique K/L combinations
Usage
1 | plotGridSearchPerplexity(celda.list)
|
Arguments
celda.list |
Object of class 'celda_list'. |
Value
A ggplot plot object showing perplexity as a function of clustering parameters.
Examples
1 2 3 4 | ## Run various combinations of parameters with 'celdaGridSearch'
celda.CG.grid.search.res = resamplePerplexity(celda.CG.sim$counts,
celda.CG.grid.search.res)
plotGridSearchPerplexity(celda.CG.grid.search.res)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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