API for daewoooo/SaaRclust
R Package to cluster long sequencing reads into chromosomes to facilitate de novo genome assembly.
| Global functions | |
|---|---|
| EMclust | Man page Source code |
| SaaRclust | Man page Source code |
| WandCratiosFeatures | Man page Source code |
| WminusCratiosFeatures | Man page Source code |
| clusters2ranges | Man page Source code |
| collapseBins | Man page Source code |
| countDirectionalReads | Man page Source code |
| countProb | Man page Source code |
| countProbOld | Man page Source code |
| counts2ranges | Man page Source code |
| estimateTheta | Man page Source code |
| exportClusteredReads | Man page Source code |
| exportGenomicLocations | Man page Source code |
| exportGenomicLocationsAllBest | Source code |
| filterInput | Man page |
| findAntiparallelClusters | Man page Source code |
| findClusterPartners | Man page Source code |
| findClusterPartners2 | Man page Source code |
| findClusterPartners_maxMatch | Man page Source code |
| findClusterPartners_simple | Man page Source code |
| findSplitedClusters | Man page Source code |
| flipCounts | Man page Source code |
| gammaFunction | Man page Source code |
| getClusterAcc | Man page Source code |
| getClusterIdentityPerChr | Man page Source code |
| getClusterIdentityPerChrPerDir | Man page Source code |
| getQualMeasure | Man page Source code |
| getRepresentativeAlignments | Man page |
| hardClust | Man page Source code |
| hardClustAccuracy | Man page Source code |
| importBams | Man page |
| importData | Man page Source code |
| importOldTestData | Man page Source code |
| importTestData | Man page |
| kahansum | Man page Source code |
| maxWandCratiosFeatures | Man page Source code |
| mergeClusters | Man page Source code |
| mergeSplitedClusters | Man page Source code |
| messageU | Source code |
| plotClustAccuracy | Man page Source code |
| plotHeatmap | Man page Source code |
| plotQualMeasure | Man page Source code |
| plotReadAlignments | Man page |
| plotReadMappingDist | Man page |
| plotThetaEstimates | Man page Source code |
| randomTheta | Man page Source code |
| readBamFileAsGRanges | Man page Source code |
| rescaleTheta | Man page Source code |
| runSaaRclust | Man page Source code |
| runSaaRclust_parallel | Source code |
| startTimedMessage | Source code |
| stopTimedMessage | Source code |
| thetaRescale | Man page Source code |
