gammaFunction: Calculate gamma function of EM algorithm
In daewoooo/SaaRclust: R Package to cluster long sequencing reads into chromosomes to facilitate de novo genome assembly.
Description
Usage
Arguments
Value
Author(s)
Description
Takes binomial probabilites for every cluster and update these probabilies given the assigment of Pacbio reads to clusters.
Usage
1
2
gammaFunction(clust.prob = NULL, pi.scaled = NULL, cellNum = NULL,
log.scale = FALSE)
Arguments
clust.prob
A list of binomial probabilities (multiplied by theta & pi parameter) of each PB read in every possible cluster
pi.scaled
Paramter estimate of the size of each cluster scaled by cell number
cellNum
Number of Strand-seq cells used for clustering.
Value
A matrix of unormalized probalities of cell states per cluster.
Author(s)
David Porubsky, Maryam Ghareghani
daewoooo/SaaRclust documentation built on May 28, 2019, 7:50 p.m.
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Description Usage Arguments Value Author(s)
Description
Takes binomial probabilites for every cluster and update these probabilies given the assigment of Pacbio reads to clusters.
Usage
1 2 | gammaFunction(clust.prob = NULL, pi.scaled = NULL, cellNum = NULL,
log.scale = FALSE)
|
Arguments
clust.prob |
A |
pi.scaled |
Paramter estimate of the size of each cluster scaled by cell number |
cellNum |
Number of Strand-seq cells used for clustering. |
Value
A matrix of unormalized probalities of cell states per cluster.
Author(s)
David Porubsky, Maryam Ghareghani
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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