clusters2ranges: Convert saarclust object into 'GRanges-class' object.
In daewoooo/SaaRclust: R Package to cluster long sequencing reads into chromosomes to facilitate de novo genome assembly.
Description
Usage
Arguments
Value
Author(s)
Description
This function takes saarclust object and for each region reports user defined number of clusters
each regions likely belongs as a GRanges-class object.
Usage
1
clusters2ranges(saarclust.obj = NULL, best.prob = 1, prob.th = 0.5)
Arguments
saarclust.obj
A path to the minimap file to load.
best.prob
Set number of highest probability clusters reported per genomic region.
prob.th
Only regions with this probability and higher will be reported.
Value
A GRanges-class object with reported cluster ID per genomic region.
Author(s)
David Porubsky
daewoooo/SaaRclust documentation built on May 28, 2019, 7:50 p.m.
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Description Usage Arguments Value Author(s)
Description
This function takes saarclust object and for each region reports user defined number of clusters
each regions likely belongs as a GRanges-class object.
Usage
1 | clusters2ranges(saarclust.obj = NULL, best.prob = 1, prob.th = 0.5)
|
Arguments
saarclust.obj |
A path to the minimap file to load. |
best.prob |
Set number of highest probability clusters reported per genomic region. |
prob.th |
Only regions with this probability and higher will be reported. |
Value
A GRanges-class object with reported cluster ID per genomic region.
Author(s)
David Porubsky
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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