countDirectionalReads: Count directional reads.
In daewoooo/SaaRclust: R Package to cluster long sequencing reads into chromosomes to facilitate de novo genome assembly.
Description
Usage
Arguments
Value
Author(s)
View source: R/countDirectionalReads.R
Description
This function expects output from custom minimap test dataset that contains original locations of mapped reads in the genome.
Usage
1
countDirectionalReads(tab.l = NULL)
Arguments
tab.l
A list of PB alignmetns separated per cell.
Value
A list of matrices reporting counts of Watson('-') and Crick('+') reads aligned to each genomic segment per cell. (rows=reads or genomic segments, cols=watson & crick read counts)
Author(s)
David Porubsky
daewoooo/SaaRclust documentation built on May 28, 2019, 7:50 p.m.
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Description Usage Arguments Value Author(s)
View source: R/countDirectionalReads.R
Description
This function expects output from custom minimap test dataset that contains original locations of mapped reads in the genome.
Usage
1 | countDirectionalReads(tab.l = NULL)
|
Arguments
tab.l |
A |
Value
A list of matrices reporting counts of Watson('-') and Crick('+') reads aligned to each genomic segment per cell. (rows=reads or genomic segments, cols=watson & crick read counts)
Author(s)
David Porubsky
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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