findClusterPartners_simple: Get pairs of clusters coming from the same chromosome with...

In daewoooo/SaaRclust: R Package to cluster long sequencing reads into chromosomes to facilitate de novo genome assembly.

Description

This function finds the pairs by computing the pairwise distances between clusters theta_wc parameters, and pais each cluster with the cluster with min dist Note that the first 23 minimum values should form a matching in the complete graph of clusters (this condition is observed to be held in practice) TODO: We should replace this simple function by a proper max matching algorithm or some other solution that properly solves this problem and finds non-overlappinh pairs of clusters

Usage

findClusterPartners_simple(theta.param = NULL)

Arguments

theta.param

A list containing estimated cell types per cluster for each cell.

Value

A vector of pairs of clusters IDs that belong to the same chromosome.

Author(s)

Maryam Ghareghani

daewoooo/SaaRclust documentation built on May 28, 2019, 7:50 p.m.